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An Automatic Quantification and Registration Strategy to Create a Gene Expression Atlas of Zebrafish Embryogenesis
Citation
Castro González, Carlos and Luengo Oroz, Miguel Ángel and Fernández de Manuel, Laura and Ledesma Carbayo, María Jesús and Santos Lleo, Andres de and Desnoulez, Sophie and Duloquin, Louise and Montagna, Sara and Bourgine, Paul and Peyrieras, Nadine (2009). An Automatic Quantification and Registration Strategy to Create a Gene Expression Atlas of Zebrafish Embryogenesis. In: "31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009)", 02/06/2009 - 06/06/2009, Minneapolis MN USA. pp. 1469-1472. https://doi.org/10.1109/IEMBS.2009.5332436.
Description
| Title: | An Automatic Quantification and Registration Strategy to Create a Gene Expression Atlas of Zebrafish Embryogenesis |
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| Author/s: |
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| Item Type: | Presentation at Congress or Conference (Article) |
| Event Title: | 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009) |
| Event Dates: | 02/06/2009 - 06/06/2009 |
| Event Location: | Minneapolis MN USA |
| Title of Book: | Proceedings of Engineering in Medicine and Biology Society, 2009. EMBC 2009. Annual International Conference of the IEEE |
| Date: | 2009 |
| Subjects: | |
| Faculty: | E.T.S.I. Telecomunicación (UPM) |
| Department: | Ingeniería Electrónica |
| Creative Commons Licenses: | Recognition - No derivative works - Non commercial |
Abstract
In order to properly understand and model the gene regulatory networks in animals development, it is crucial to obtain detailed measurements, both in time and space, about their gene expression domains. In this paper, we propose a complete computational framework to fulfill this task and create a 3D Atlas of the early zebrafish embryogenesis annotated with both the cellular localizations and the level of expression of different genes at different developmental stages. The strategy to construct such an Atlas is described here with the expression pattern of 5 different genes at 6 hours of development post fertilization.
More information
| Item ID: | 13889 |
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| DC Identifier: | https://oa.upm.es/13889/ |
| OAI Identifier: | oai:oa.upm.es:13889 |
| DOI: | 10.1109/IEMBS.2009.5332436 |
| Deposited by: | Memoria Investigacion |
| Deposited on: | 25 Feb 2013 08:23 |
| Last Modified: | 21 Apr 2016 13:19 |
