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Chano González, Victor Manuel and López de Heredia Larrea, Unai and Collada Collada, Maria Carmen and Soto De Viana, Álvaro (2017). Transcriptomic analysis of juvenile wood formatin during the growing season in Pinus canariensis. "Holzforschung" ; pp. 919-937. ISSN 0018-3830. https://doi.org/10.1515/hf-2017-0014.
Title: | Transcriptomic analysis of juvenile wood formatin during the growing season in Pinus canariensis |
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Author/s: |
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Item Type: | Article |
Título de Revista/Publicación: | Holzforschung |
Date: | 2017 |
ISSN: | 0018-3830 |
Subjects: | |
Freetext Keywords: | DNA libraries, arlywood(EW), genetic,juvenile wood, latewood (LW),microarrays,Pinus canariensism,transcriptome,wood formation. |
Faculty: | E.T.S.I. Montes, Forestal y del Medio Natural (UPM) |
Department: | Sistemas y Recursos Naturales |
Creative Commons Licenses: | Recognition - No derivative works - Non commercial |
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A noticeable proportion of low transcribed genes involved in wood formation in conifers may have been missed in previous transcriptomic studies. This could be the case for genes related to less abundant cell types, such as axial parenchyma and resin ducts, and genes related to juvenile wood. In this study, two normalized libraries have been obtained from the cambial zone of young individuals of Pinus canariensis C. Sm. ex DC, a species in which such cells are comparatively abundant. These two libraries cover earlywood (EW) and latewood (LW) differentiation, and reads have been de novo meta-assembled into one transcriptome. A high number of previously undescribed genes have been found. The transcriptional profiles during the growing season have been analyzed and several noticeable differences with respect to previous studies have been found. This work contributes to a more complete picture of wood formation in conifers. The genes and their transcription profiles described here provide a useful molecular tool for further studies focused on relevant developmental issues, such as wound response and the formation of traumatic wood, re-sprouting, etc., presumably related to those cells.
Type | Code | Acronym | Leader | Title |
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Government of Spain | AGL2009-10606 | Unspecified | Unspecified | Unspecified |
Government of Spain | SPIP2014-0109 | Unspecified | Unspecified | Unspecified |
FP7 | 289841 | PROCOGEN | Unspecified | Promoting a functional and comparative understanding of the conifer genome- implementing applied aspects for more productive and adapted forests |
Item ID: | 50541 |
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DC Identifier: | https://oa.upm.es/50541/ |
OAI Identifier: | oai:oa.upm.es:50541 |
DOI: | 10.1515/hf-2017-0014 |
Official URL: | https://www.degruyter.com/view/j/hfsg.2017.71.issue-12/hf-2017-0014/hf-2017-0014.xml |
Deposited by: | Memoria Investigacion |
Deposited on: | 03 May 2018 08:15 |
Last Modified: | 30 Apr 2019 12:55 |