MedVir: 3D visual interface applied to gene profile analysis

Gracia Berná, Antonio and González Tortosa, Santiago and Robles Forcada, Víctor (2012). MedVir: 3D visual interface applied to gene profile analysis. In: "2012 International Conference on High Performance Computing and Simulation (HPCS)", 02/07/2014 - 06/07/2014, Madrid. ISBN 978-1-4673-2359-8. pp. 693-695.

Description

Title: MedVir: 3D visual interface applied to gene profile analysis
Author/s:
  • Gracia Berná, Antonio
  • González Tortosa, Santiago
  • Robles Forcada, Víctor
Item Type: Presentation at Congress or Conference (Article)
Event Title: 2012 International Conference on High Performance Computing and Simulation (HPCS)
Event Dates: 02/07/2014 - 06/07/2014
Event Location: Madrid
Title of Book: International Conference on High Performance Computing and Simulation (HPCS), 2012
Date: 2 July 2012
ISBN: 978-1-4673-2359-8
Subjects:
Freetext Keywords: DNA microarray,dimensionality reduction,manifold learning, visualization
Faculty: Centro de Supercomputación y Visualización de Madrid (CeSViMa) (UPM)
Department: Otro
Creative Commons Licenses: Recognition - No derivative works - Non commercial

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Abstract

The use of data mining techniques for the gene profile discovery of diseases, such as cancer, is becoming usual in many researches. These techniques do not usually analyze the relationships between genes in depth, depending on the different variety of manifestations of the disease (related to patients). This kind of analysis takes a considerable amount of time and is not always the focus of the research. However, it is crucial in order to generate personalized treatments to fight the disease. Thus, this research focuses on finding a mechanism for gene profile analysis to be used by the medical and biologist experts. Results: In this research, the MedVir framework is proposed. It is an intuitive mechanism based on the visualization of medical data such as gene profiles, patients, clinical data, etc. MedVir, which is based on an Evolutionary Optimization technique, is a Dimensionality Reduction (DR) approach that presents the data in a three dimensional space. Furthermore, thanks to Virtual Reality technology, MedVir allows the expert to interact with the data in order to tailor it to the experience and knowledge of the expert.

More information

Item ID: 25931
DC Identifier: http://oa.upm.es/25931/
OAI Identifier: oai:oa.upm.es:25931
Official URL: http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6266996&tag=1
Deposited by: Memoria Investigacion
Deposited on: 21 Apr 2015 17:52
Last Modified: 26 Apr 2015 08:13
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